Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LUAD rs79429455 chr11:62599260 A/T 2.27E-5 505 21.93 21.73 7.7 KM Plot
LUAD rs79611937 chr2:10966963 C/T 2.47E-5 501 20.83 33.17 4.13 KM Plot
LUAD rs79768864 chr17:47446968 C/A 5.75E-11 502 22.03 19.15 4.55 KM Plot
LUAD rs79796330 chr1:7759701 T/G 2.35E-6 502 20.98 25 7.22 KM Plot
LUAD rs79889018 chr11:62610807 C/G 1.63E-5 504 21.93 21.75 7.7 KM Plot
LUAD rs79945045 chr17:45857097 C/A 7.79E-7 504 21.88 20.87 3.97 KM Plot
LUAD rs79983496 chr11:62588128 C/G 2.27E-5 505 21.93 21.73 7.7 KM Plot
LUAD rs79988166 chr17:45843670 T/A 3.56E-7 503 21.9 20.87 3.97 KM Plot
LUAD rs8076023 chr17:47399633 C/G 3.35E-11 501 21.82 21.93 4.55 KM Plot
LUSC rs10516508 chr4:105356618 A/C 2.87E-12 493 0.4 20.82 22.22 KM Plot
LUSC rs1056104 chr2:39008949 C/T 1.55E-15 493 22.9 16.33 0.3 KM Plot
LUSC rs10899267 chr11:76429305 C/T 3.09E-6 493 5.37 21.82 22.33 KM Plot
LUSC rs1124375 chr1:240127293 C/T 4.34E-12 491 21.5 26.97 2.02 KM Plot
LUSC rs112442827 chr2:22883125 ACAAT/A 0 490 21.73 21.77 0.28 KM Plot
LUSC rs12408878 chr1:240125264 C/A 9.2E-12 492 21.57 27.47 2.02 KM Plot